Multispectral single shot imaging systems can benefit computer vision applications in needs of a compact and affordable imaging system. Spectral filter arrays technology meets the requirement, but can lead to artifacts due to inhomogeneous intensity levels between spectral channels due to filter manufacturing constraints, illumination and object properties. One solution to solve this problem is to use high dynamic range imaging techniques on these sensors. We define a spectral imaging pipeline that incorporates high dynamic range, demosaicing and color image visualization. Qualitative evaluation is based on real images captured with a prototype of spectral filter array sensor in the visible and near infrared.